| samples-and-data↗ | 6 | TypeScript | 16 | 48 |
| deprecated-clonotype-browser↗ | 4 | TypeScript | 1 | 1 |
| mixcr-shm-trees↗ | 3 | Vue | 10 | 14 |
| mixcr-clonotyping↗ | 2 | TypeScript | 21 | 18 |
| clonotype-browser-2↗ | 2 | TypeScript | 1 | 0 |
| graph-maker↗ | 2 | TypeScript | 15 | 22 |
| deprecated-mixcr-clonotyping↗ | 2 | TypeScript | 2 | 3 |
| star-read-mapping↗ | 1 | R | 6 | 7 |
| antibody-sequence-liabilities↗ | 1 | Python | 11 | 10 |
| antibody-tcr-lead-selection↗ | 1 | TypeScript | 38 | 58 |
| repertoire-mutation-heatmap↗ | 1 | TypeScript | 2 | 4 |
| cdr3-spectratype↗ | 1 | TypeScript | 12 | 12 |
| cell-browser↗ | 1 | TypeScript | 4 | 2 |
| new-clonotype-browser↗ | 1 | TypeScript | 4 | 4 |
| clonotype-browser↗ | 1 | TypeScript | 10 | 11 |
| makeblastdb↗ | 1 | TypeScript | 2 | 4 |
| xsv-import↗ | 1 | TypeScript | 3 | 7 |
| immunewatch-detect↗ | 0 | Vue | 4 | 3 |
| 3d-structure-clustering↗ | 0 | TypeScript | 1 | 1 |
| cluster-markers↗ | 0 | TypeScript | 6 | 6 |
| clonotype-space↗ | 0 | Python | 19 | 22 |
| deprecated-repertoire-distance↗ | 0 | Vue | 2 | 2 |
| deprecated-repertoire-diversity↗ | 0 | Vue | 2 | 2 |
| deprecated-repertoire-gene-usage↗ | 0 | Vue | 1 | 2 |
| differential-clonotype-abundance↗ | 0 | TypeScript | 8 | 11 |
| differential-expression↗ | 0 | Vue | 5 | 5 |
| dimensionality-reduction↗ | 0 | Python | 1 | 3 |
| fastq-reader↗ | 0 | TypeScript | 1 | 3 |
| fastqc↗ | 0 | TypeScript | 5 | 2 |
| feature-integration↗ | 0 | Python | 1 | 3 |
| functional-analysis↗ | 0 | TypeScript | 6 | 7 |
| gene-browser↗ | 0 | TypeScript | 3 | 1 |
| clonotype-enrichment↗ | 0 | Python | 17 | 26 |
| immune-assay-data↗ | 0 | TypeScript | 12 | 20 |
| clonotype-distribution↗ | 0 | Python | 1 | 1 |
| immuno-match↗ | 0 | Python | 3 | 3 |
| import-sc-rnaseq-data↗ | 0 | Python | 8 | 16 |
| import-vdj-data↗ | 0 | TypeScript | 10 | 30 |
| java-debug↗ | 0 | TypeScript | 1 | 1 |
| leiden-clustering↗ | 0 | TypeScript | 4 | 2 |
| clonotype-clustering↗ | 0 | TypeScript | 21 | 17 |
| mixcr-amplicon-alignment↗ | 0 | TypeScript | 22 | 37 |
| cellecta-drivermap-air-mixcr-clonotyping↗ | 0 | Python | 2 | 3 |
| mixcr-library-builder↗ | 0 | Vue | 4 | 3 |
| mixcr-scfv-clonotyping↗ | 0 | TypeScript | 14 | 28 |
| cell-type-annotation↗ | 0 | Python | 3 | 1 |
| cell-ranger↗ | 0 | TypeScript | 8 | 11 |
| paratope-clustering↗ | 0 | TypeScript | 2 | 10 |
| pseudotime-inference↗ | 0 | TypeScript | 3 | 2 |
| rarefaction↗ | 0 | TypeScript | 6 | 8 |
| redefine-clonotypes↗ | 0 | TypeScript | 13 | 24 |
| repertoire-distance↗ | 0 | TypeScript | 3 | 8 |
| repertoire-distance-2↗ | 0 | TypeScript | 3 | 6 |
| repertoire-diversity↗ | 0 | TypeScript | 11 | 12 |
| blast↗ | 0 | Vue | 1 | 2 |
| runenv-python-3↗ | 0 | Python | 11 | 24 |
| batch-correction↗ | 0 | Python | 1 | 1 |
| sc-differential-expression↗ | 0 | TypeScript | 3 | 5 |
| sequence-properties↗ | 0 | Python | 1 | 0 |
| software-fastqc↗ | 0 | HTML | 1 | 0 |
| software-mmseqs2↗ | 0 | Shell | 2 | 7 |
| software-ptransform↗ | 0 | Python | 1 | 0 |
| spatiotemporal-analysis↗ | 0 | Python | 3 | 3 |
| 3d-structure-prediction↗ | 0 | TypeScript | 1 | 2 |
| synthetic-repertoire-profiler↗ | 0 | TypeScript | 2 | 2 |
| table↗ | 0 | TypeScript | 2 | 2 |
| tcr-disco↗ | 0 | TypeScript | 1 | 2 |
| vj-gene-usage↗ | 0 | TypeScript | 13 | 11 |
| compositional-analysis↗ | 0 | Python | 4 | 8 |
